学术论文
- Yusen Ye, Lin Gao, Shihua Zhang. Circular trajectory reconstruction uncovers cell-cycle progression and regulatory dynamics from single-cell Hi-C maps[J]. Advanced Science.（SCI源刊，已接收，IF=15.84，中科院一区）
- Yusen Ye, Lin Gao, Shihua Zhang. MSTD: an efficient method for detecting multi-scale topological domains from symmetric and asymmetric 3D genomic maps[J]. Nucleic Acids Research,2019,47(11):e65-e65.（SCI：000475702000005，IF=11.501，中科院一区）
- Yusen Ye, Lin Gao, Shihua Zhang. Integrative Analysis of Transcription Factor Combinatorial Interactions Using a Bayesian Tensor Factorization Approach[J]. Frontiers in Genetics,2017,8:140.（SCI：000412012200001，IF=3.517，中科院二区）
- Yusen Ye, Lin Gao, Shihua Zhang. MSTD for detecting topological domains from 3D genomic maps [M]. Methods in Molecular Biology. （学术专著）
- Fei Xiao, Lin Gao, Yusen Ye, et al. Inferring gene regulatory networks using conditional regulation pattern to guide candidate genes. Plos one, 2016, 11(5): e0154953.（SCI：000376588600073，IF=2.776，中科院三区）